5,776 research outputs found

    Thermal behavior of Quantum Cellular Automaton wires

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    We investigate the effect of a finite temperature on the behavior of logic circuits based on the principle of Quantum Cellular Automata (QCA) and of ground state computation. In particular, we focus on the error probability for a wire of QCA cells that propagates a logic state. A numerical model and an analytical, more approximate, model are presented for the evaluation of the partition function of such a system and, consequently, of the desired probabilities. We compare the results of the two models, assessing the limits of validity of the analytical approach, and provide estimates for the maximum operating temperature.Comment: 15 pages, 7 figures, uses revte

    Small antimicrobial resistance proteins (SARPs): Small proteins conferring antimicrobial resistance

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    Small open reading frames are understudied as they have been historically excluded from genome annotations. However, evidence for the functional significance of small proteins in various cellular processes accumulates. Proteins with less than 70 residues can also confer resistance to antimicrobial compounds, including intracellularly-acting protein toxins, membrane-acting antimicrobial peptides and various small-molecule antibiotics. Such herein coined Small Antimicrobial Resistance Proteins (SARPs) have emerged on evolutionary timescales or can be enriched from protein libraries using laboratory evolution. Our review consolidates existing knowledge on SARPs and highlights recent advancements in proteomics and genomics that reveal pervasive translation of unannotated genetic regions into small proteins that show features of known SARPs. The potential contribution of small proteins to antimicrobial resistance is awaiting exploration

    A buffered media system for yeast batch culture growth

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    BACKGROUND: Fungi are premier hosts for the high-yield secretion of proteins for biomedical and industrial applications. The stability and activity of these secreted proteins is often dependent on the culture pH. As yeast acidifies the commonly used synthetic complete drop-out (SD) media that contains ammonium sulfate, the pH of the media needs to be buffered in order to maintain a desired extracellular pH during biomass production. At the same time, many buffering agents affect growth at the concentrations needed to support a stable pH. Although the standard for biotechnological research and development is shaken batch cultures or microtiter plate cultures that cannot be easily automatically pH-adjusted during growth, there is no comparative study that evaluates the buffering capacity and growth effects of different media types across pH-values in order to develop a pH-stable batch culture system. RESULTS: We systematically test the buffering capacity and growth effects of a citrate-phosphate buffer (CPB) from acidic to neutral pH across different media types. These media types differ in their nitrogen source (ammonium sulfate, urea or both). We find that the widely used synthetic drop-out media that uses ammonium sulfate as nitrogen source can only be effectively buffered at buffer concentrations that also affect growth. At lower concentrations, yeast biomass production still acidifies the media. When replacing the ammonium sulfate with urea, the media alkalizes. We then develop a medium combining ammonium sulfate and urea which can be buffered at low CPB concentrations that do not affect growth. In addition, we show that a buffer based on Tris/HCl is not effective in maintaining any of our media types at neutral pH even at relatively high concentrations. CONCLUSION: Here we show that the buffering of yeast batch cultures is not straight-forward and addition of a buffering agent to set a desired starting pH does not guarantee pH-maintenance during growth. In response, we present a buffered media system based on an ammonium sulfate/urea medium that enables relatively stable pH-maintenance across a wide pH-range without affecting growth. This buffering system is useful for protein-secretion-screenings, antifungal activity assays, as well as for other pH-dependent basic biology or biotechnology projects

    Nieuwe bemestingsnormen voor de biologische landbouw : naar 100% biologische meststoffen en grondgebonden veehouderij

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    In de biologische landbouw willen we naar 100% biologische mest. In een ideale situatie zijn de mineralenkringlopen gesloten en wordt voorkomen dat ongewenste stoffen op biologische bedrijven terecht komen. De ‘Werkgroep 100% biologische meststoffen’ heeft een praktisch voorstel gemaakt voor de toekomst. In dit Biokennisbericht wordt dit voorstel voorgelegd

    Correlated Timing and Spectral Variations of the Soft X-ray Transient Aquila X-1: Evidence for an Atoll classification

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    Based on Rossi X-ray Timing Explorer data, we discuss the classification of the soft X-ray transient Aquila X-1 in the Z/atoll scheme, and the relation of its kilohertz quasi-periodic oscillations (kHz QPO) properties to the X-ray colors. The color-color diagram shows one elongated ("banana") structure and several "islands" of data points. The power spectra of the island are best represented by a broken power-law, whereas those of the banana by a power-law below ~ 1 Hz plus an exponentially cut-off component at intermediate frequencies (30-60 Hz). The parameters of these two components change in correlation with the position of the source in the color-color diagram. Based on the pattern that the source shows in the color-color diagram and its aperiodic variability we conclude that Aquila X-1 is an atoll source. We have also investigated the possible correlation between the frequency of the kHz QPO and the position of the source in the color-color diagram. The complexity seen in the frequency versus count rate diagram is reduced to a single track when the frequency is plotted against hard or soft color.Comment: 9 pages, 5 figures. Accepted for publication in Ap

    Rest Interval Length Does Not Affect Total Exercise Volume During Lower Body Resistance Training

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    Please refer to the pdf version of the abstract located adjacent to the title
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